Preferences
Preferences are located in preferences_CellExplorer.m and is stored as fields in UI.preferences.*.
Display settings
- customCellPlotIn1-6
- incomplete list: 'Single waveform','All waveforms','All waveforms (image)','Single raw waveform','All raw waveforms','Single ACG','All ACGs','All ACGs (image)','CCGs (image)','Sharp wave-ripple'
- ACG_type
- ['Normal' (100ms), 'Wide' (1s), 'Narrow' (30ms)]
- monoSynDispIn
- ['None', 'Selected', 'All']
- plotCountIn
- ['GUI 1+3','GUI 2+3','GUI 3+3','GUI 3+4','GUI 3+5','GUI 3+6']
- metricsTableType
- ['Metrics','Cells','None']
- plotWaveformMetrics
- [0,1]
- dispLegend
- [0,1]
Initial data displayed in the customPlot
- plotXdata
- 'firingRate'
- plotYdata
- 'peakVoltage'
- plotZdata
- 'troughToPeak'
Autosave settings
- autoSaveFrequency
- 6
- autoSaveVarName
- 'cell_metrics'
Cell type classification definitions
- cellTypes
- {'Unknown', 'Pyramidal Cell 1', 'Pyramidal Cell 2', 'Pyramidal Cell 3', 'Narrow Interneuron', 'Wide Interneuron'}
- deepSuperficial
- {'Unknown', 'Cortical', 'Deep', 'Superficial'}
Cell type classification colors
- cellTypeColors
- [ [.5,.5,.5];[.2,.2,.8];[.2,.8,.2];[0.2,0.8,0.8];[.8,.2,.2];[0.8,0.2,0.8] ]
Fields used to define the tSNE space
- tSNE_calcWideAcg
- boolean
- tSNE_calcNarrowAcg
- boolean
- tSNE_calcFiltWaveform
- boolean
- tSNE_calcRawWaveform
- boolean
List of fields to use in the general tSNE representation
- tSNE_metrics
- {'FiringRate', 'ThetaModulationIndex', 'BurstIndex_Mizuseki2012', 'TroughToPeak', 'AB_ratio', 'BurstIndex_Royer2012', 'ACG_tau_rise', 'ACG_tau_burst', 'ACG_h', 'ACG_tau_decay', 'CV2', 'BurstIndex_Doublets', 'ThetaPhaseTrough', 'ThetaEntrainment', 'derivative_TroughtoPeak'}
- tSNE_dDistanceMetric
- default 'seuclidean'
Highlighting excitatory and inhibitory cells
- displayInhibitory
- boolean
- displayExcitatory
- boolean
Firing rate map setting
- showHeatmap
- boolean
- showLegend
- boolean
- showHeatmapColorbar
- boolean